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2007 Alumni Association Award for Excellence Recipients from EBI:
James N. Benardini III, Ph.D. candidate Microbiology, Molecular Biology and Biochemistry
Advisor Ronald L. Crawford
Cornelia Sawatzky, M.S. candidate Accountancy
Current Graduate Students
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Andrew Johnson
Ph.D. student
Microbiology, Molecular Biology and Biochemistry
Major professor: Andrzej J. Paszczynski
andrewjohnson@vandals.uidaho.edu
Andrew’s current research interest is the development of nanoparticle-biomolecule hybrids, in particular the immobilization of enzymes to magnetic nanoparticles via the fusion of surface-specific affinity peptides. The mechanism by which these peptide sequences associate with an inorganic surface and the characterization of this interaction is of exceptional importance. Immobilization using affinity peptides can be performed under ambient conditions and could potentially be used to simultaneously purify and immobilize proteins important for biodegradation, biomedical applications, and industrial processes. Andrew is also interested in the mechanisms involved in formation of magnetic nanoparticles in magnetotactic bacteria and the interactions of biomolecules present in the cell with the surface of these particles. By harnessing the inherent fidelity of biological systems to produce nanoparticles with specific crystal structures and of a narrow size range distribution, quality control issues could be solved while also avoiding time-consuming chemical synthesis with toxic reagents. The study of natural nanoparticles formation and subsequent association of biomolecules with the surface of these nanoparticles would improve the design and implementation of nanoparticle-biomolecule hybrids.
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Fatimah Al-hamlan
Ph.D. student
Microbiology, Molecular Biology and Biochemistry
Major professor: Ronald L. Crawford
fatimahalhamlan@vandals.uidaho.edu
Fatimah is using microarray techniques to characterize viral populations in natural waters, treated and untreated wastewaters, and water from confined human environments such as spacecraft. Her work will lead to a better understanding of the roles viruses play in microbial communities within aqueous environmental systems, including their potential for causing human disease.
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Reema Bansal
M.S. student
Environmental Science
Major professor: Ronald L. Crawford
rbansal@vandals.uidaho.edu
Reema is studying the genetics of perchlorate degradation in bacteria isolated from extreme environments. Her primary task is to clone and characterize perchlorate operon genes and genes involved in dismutation of chlorite, a product of perchlorate reduction. These genes will be employed by others of our team to construct artificial gene cassettes to be used to confer perchalorate reduction capabilities within natural microbial biofilms.
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Aleksandra Checinska
Ph.D. student
Environmental Science
Major professor: Andrzej J. Paszczynski
achecinska@uidaho.edu
Ola's current objective is B. pumilus endospores sterilization with supercritical fluid carbon dioxide and finding out mechanisms of its resistance on physiological levels.
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Thomas Nickles
Ph.D. student
Environmental Science
Major professor: Ronald L. Crawford
tnickles@vandals.uidaho.edu
Tom is examining microbial communities of extreme terrestrial environments that can be considered surrogates for extraterrestrial environments such as the soils and rocks of Mars. He is particularly interested in characterizing microbial metabolic processes within rock varnish, a mineral coating found on surfaces of rocks in Earth's deserts, and perhaps also on Mars. Tom's research may lead to new methods for detection of life in extraterrestrial environments.
Edison Shieh
M.S. student
Microbiology, Molecular Biology and Biochemistry
Major Professor: Ronald L. Crawford
Co-Major Professor: Andrzej Paszczynski
eshieh@uidaho.edu
Edison's research relates to sterilization with supercritical carbon dioxide.
Malcolm Burbank
Ph.D. student
Microbiology, Molecular Biology and Biochemistry
Major Professor: Ronald L. Crawford
mburbank@vandals.uidaho..edu
Malcolm is working on biomineralization of liquefaction-prone soils.
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Katarzyna Kucharzyk
Ph.D. student
Environmental Science
Major professor: Thomas Hess
kkucharzyk@vandals.uidaho.edu
Kate is studying the use of genetic algorithms to optimize perchlorate degradation.
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Recently Graduated EBI Students
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Stephanie Smith, 2008
M.S.,Microbiology, Molecular Biology and Biochemistry
Major professor: Ronald L. Crawford
Thesis title: Life in extreme environments: diversity, characterization, and potential utilization of alkalitolerant and halotolerant bacteria from Alvord Basin, Oregon.
James N. Benardini III, 2008
Ph.D., Microbiology, Molecular Biology and Biochemistry
Major professor: Ronald L. Crawford
Dissertation title: Microbiology of aquatic environments: characterizations of the microbiotas of municipal water systems, the International Space Station Internal Active Thermal Coltrol System's heat transport fluid, and US Space Shuttle drinking water
Ravindra Paidisetti, 2007
M.S., Microbiology, Molecular Biology and Biochemistry
Major professor: Andrzej J. Paszczynski
Thesis title: Ecoproteomic and ecogenomic approaches to monitor microbial activity in a subsurface aquifer, and Effect of compost infusion enrichement on bacterial community structure of polycyclic aromatic hydrocarbon contaminated soils
Hyuk-Soon Ihm, 2007
M.S., Environmental Science
Major professor: Andrzej J. Paszczynski
Thesis title: Characterization of novel dimethylformamide-degrading bacterium
Cynthia K. Brinkman, 2006
M.S., Environmental Science
Major professor: Ronald L. Crawford
Thesis title: Phylogenetic characterization of microbial communities from carbon tetrachloride contaminated soils
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Frederik P.J. Vandecasteele, 2006
Ph.D., Biological and Agricultural Engineering
Major professor: Thomas F. Hess
Dissertation title: Using genetic algorithms to optimize functions of microbial ecosystems
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Chun Li, 2006
Ph.D., Chemistry
Major professor: Ronald L. Crawford
Dissertation title: Synthesis of isoxazole derivatives
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Anna Zawadzka, 2006
Ph.D., Microbiology, Molecular Biology and Biochemistry
Major professor: Andrzej J. Paszczynski
Dissertation title: Microbial metabolites: structure and function of bacterial siderophores from Pseudomonas species and identification of secondary metabolites excreted by brown rot Gleophyllum species
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Sudeep Perumbakkam, 2005
Ph.D., Microbiology, Molecular Biology and Biochemistry
Major professor: Ronald L. Crawford
Dissertation title: Introduction of genes into mixed species and pure culture biofilms through natural transformation
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Christopher Ball, 2005
Ph.D., Microbiology, Molecular Biology and Biochemistry
Major professor: Ronald L. Crawford
Dissertation title: Culture-independent isolation of environmental bacterial species for genomic analysis
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The EBI Outstanding Undergraduate Researcher Award Winners
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2008 - Machele Gonzalez
Microbiology
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2007 - Conni Carson
Microbiology, Molecular Biology and Biochemistry
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2006 - Andrew Johnson
Microbiology
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2005 - Jordan Ballinger
Microbiology, Molecular Biology and Biochemistry
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2004 - Sheri Wardwell
Biological Sciences
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2003 - Tara Stuecker
Biological Sciences
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2002 - Daniel Erwin
Microbiology, Molecular Biology and Biochemistry
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2001 - Joohye Park
Microbiology, Molecular Biology and Biochemistry
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2000 - Sachiko Sano
Microbiology, Molecular Biology and Biochemistry
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1999 - Amey and William Holmes
Microbiology, Molecular Biology and Biochemistry
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1998 - Karen Cloud
Microbiology, Molecular Biology and Biochemistry
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1997 - Jack Millstein
Microbiology, Molecular Biology and Biochemistry
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1996 - Nikole Winters
Microbiology, Molecular Biology and Biochemistry
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Environmental Design Contest Teams, Waste-management and Environmental Research Consortium

2007 First Place winners: Dusty Rose Berggren, Jesse Bazley, and Tyler Vincent
Project title: Electrocoagulation to remove silica from inland brackish water
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